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Abstract Water levels in deltas and estuaries vary on multiple timescales due to coastal, hydrologic, meteorologic, geologic, and anthropogenic factors. These diverse factors increase the uncertainty of, and may bias, relative sea level rise (RSLR) estimates. Here, we evaluate RSLR in San Francisco Bay and the Sacramento-San Joaquin Delta, USA by applying a physics-based, nonlinear regression to 50 tide gauges that determines the spatially varying controls on daily mean water level for water years 2004–2022. Results show that elevated river flow and pumping (99th percentile) raise water level up to 6 m and lower it up to 0.35 m, respectively, and coastal water level variations are attenuated by 30-60% within the Delta. Strong westerly winds raise water level up to 0.17 m, and tidal-fluvial interaction during spring tides and low discharge raises water level up to 0.15 m. Removal of these interfering factors greatly improves RSLR estimates, narrowing 95% confidence intervals by 89–99% and removing bias due to recent drought. Results show that RSLR is spatially heterogeneous, with rates ranging from − 2.8 to 12.9 mm y^-1(95% uncertainties < 1 mm y^-1). RSLR also exceeds coastal SLR of 3.3 mm y^-1in San Francisco at 85% of stations. Thus, RSLR in the Delta is strongly influenced by local vertical land motion and will likely produce significantly different, location-dependent future flood risk trajectories. 

Abstract We develop idealized analytical and numerical models to study how storm surge amplitudes vary within frictional, weakly convergent, nonreflective estuaries. Friction is treated using Chebyshev polynomials. Storm surge is represented as the sum of two sinusoidal components, and a third constituent represents the semidiurnal tide (D₂). An empirical fit of storm surge shows that two sinusoidal components adequately represent storm surge above a baseline value (R² = 0.97). We find that the spatial transformation of surge amplitudes depends on the depth of the estuary, and characteristics of the surge wave including time scale, amplitude, asymmetry, and surge‐tide relative phase. Analytical model results indicate that surge amplitude decays more slowly (largere‐folding) in a deeper channel for all surge time scales (12–72 hr). Deepening of an estuary results in larger surge amplitudes. Sensitivity studies show that surges with larger primary amplitudes (or shorter time scales) damp faster than those with smaller amplitudes (or larger time scales). Moreover, results imply that there is a location with maximum sensitivity to altered depth, offshore surge amplitude, and time scale and that the location of observed maximum change in surge amplitude along an estuary of simple form moves upstream when depth is increased. Further, the relative phase of surge to tide and surge asymmetry can change the spatial location of maximum change in surge. The largest change due to increased depth occurs for a large surge with a short time scale. The results suggest that both sea level rise and channel deepening may also alter surge amplitudes.